PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07465g02002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 822aa    MW: 90754.1 Da    PI: 5.6768
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07465g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.28.8e-25146247199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+
  Niben101Scf07465g02002.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDS 229
                               99*********************999*****9555554.49******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F   ++++ +l+++v+r+
  Niben101Scf07465g02002.1 230 VLFI--RDEKSQLMLGVRRA 247
                               ****..4567778***9997 PP

2Auxin_resp782.4e-26272348183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGm   +       +  r++Gt+vg+sdldp+rWp+SkWr+L+
  Niben101Scf07465g02002.1 272 AAHAAANRSTFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMSPVV-------PFSRYMGTIVGISDLDPLRWPGSKWRCLQ 348
                               79*********************************9999****97655.......5579************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-47133275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-42139260IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-23145246No hitNo description
PfamPF023622.4E-22146247IPR003340B3 DNA binding domain
PROSITE profilePS5086313.267146248IPR003340B3 DNA binding domain
SMARTSM010197.0E-25146248IPR003340B3 DNA binding domain
PfamPF065071.3E-21272348IPR010525Auxin response factor
PROSITE profilePS5174517.388719809IPR000270PB1 domain
SuperFamilySSF542775.89E-7733789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MGSVEEKHKP GSLVSGAHTL LEEMKLLKEM QDHSGGRKLI NSELWHACAG PLVTLPQVGS  60
LVYYFPQGHS EQVAVSTNRT ATSQIPNYPN LASQLLCQVH NVTLHADKET DEIYAQMSLQ  120
PVNAEKDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYSMQ  180
PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDSV LFIRDEKSQL  240
MLGVRRANRQ QNSLPSSVLS ADSMHIGVLA AAAHAAANRS TFTIFYNPRA CPSEFVIPLA  300
KYRKSVYGTQ LSVGMSPVVP FSRYMGTIVG ISDLDPLRWP GSKWRCLQAE WDEPGCGDKQ  360
SRVSPWEVET PESLFIFPSL TAGLKRPYQS SFLGGQTEWD SLMHRPFMRV PENVYGELQS  420
SSISNLWSEQ LMKMLARPPG VTGLQCGVPT VQDIKVALPQ ESRNLIHAAG NQKPELSTVE  480
DTSVQSERNP QVILNQPCVV NSISSQQATL QPKSQPPEKV GSDTVGISSE QAKETSVSVD  540
RLDQCQSLGQ CNDEKVTIKP ASPHILPTDA TASHQNSLSP LQSSPWRQIE AASTNNILQC  600
SNNNEWNLPF QSTAGLLRSP VSNSTLTKHE HSFMLPDSVI GPGLAPIGQD LWDHQLNDVK  660
CFSQTNLQVP LLTQDITNMQ FLPDSYGFKD LSEESHNQSD IYSCLNFDSN SGSTVIDNSV  720
TSTIQKAGSV GRSIDVSSFK TYDELRSEIE RMFGLEGLLN DTRGSGWKLV YVDYENDVLL  780
VGDDPWEILS PTEVQQMGEE GMQLLNSAGL QGINGSTSEF PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013735392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465083.10.0PREDICTED: auxin response factor 5-like
RefseqXP_016465084.10.0PREDICTED: auxin response factor 5-like
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLK4BVK30.0K4BVK3_SOLLC; Auxin response factor
STRINGSolyc04g081240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58592334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein